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ZHANG Q, TÁBORSKÝ P, SILBERMAN JD, PÁNEK T, ČEPIČKA I, SIMPSON AGB. 2015: Marine isolates of Trimastix marina form a plesiomorphic deep-branching lineage within Preaxostyla, separate from other known trimastigids (Paratrimastix n. gen.) Protist, 166: 468-491.
KUNCA T, SMEJKALOVÁ P, ČEPIČKA I. 2015: Trichomoniasis in European sparrowhawks in the Czech Republic. Folia Parasitologica, 62: 035.
YUBUKI N, PÁNEK T, YABUKI A, ČEPIČKA I, TAKISHITA K, INAGAKI Y, LEANDER BS. 2015: Morphological identities of two different marine stramenopile environmental sequence clades: Bicosoeca kenaiensis (Hilliard, 1971) and Cantina marsupialis (Larsen and Patterson, 1990) gen. nov., comb. nov. Journal of Eukaryotic Microbiology, 62: 532-542.
CÉZA V, PÁNEK T, SMEJKALOVÁ P, ČEPIČKA I. 2015: Molecular and morphological diversity of the genus Hypotrichomonas (Parabasalia: Hypotrichomonadida), with descriptions of six new species. European Journal of Protistology, 51: 158-172.
ZADROBÍLKOVÁ E, WALKER G, ČEPIČKA I. 2015: Morphological and molecular evidence support a close relationship between the free-living archamoebae Mastigella and Pelomyxa. Protist, 166: 14-41.
Chapters in books
WALKER G, ZADROBÍLKOVÁ E, ČEPIČKA I. 2017. Archamoebae. In: Archibald JM, Simpson AGB, Slamovits CH (Eds), Handbook of the Protists, 2nd edition, Springer, 1349-1403.
KULDA J, NOHÝNKOVÁ E, ČEPIČKA I. 2017. Retortamonadida (with notes on Carpediemonas-like organisms). In: Archibald JM, Simpson AGB, Slamovits CH (Eds), Handbook of the Protists, 2nd edition, Springer, 1247-1278.
ČEPIČKA I, DOLAN MF, Gile GH. 2017. Parabasalia. In: Archibald JM, Simpson AGB, Slamovits CH (Eds), Handbook of the Protists, 2nd edition, Springer, 1175-1218.
PÁNEK T, ČEPIČKA I. 2012. Diversity of Heterolobosea. In: Caliskan M (Ed.), Genetic Diversity in Microorganisms, InTech, Rijeka, ISBN 979-953-307-161-8, pp. 3-26.
SIMPSON AGB, ČEPIČKA I 2009: Amitochondriate protists (diplomonads, parabasalids and oxymonads). In: Schaechter M (Ed.), Encyclopedia of Microbiology, 3rd edition, Elsevier, Oxford, pp. 545-557.
ČEPIČKA I, LUKEŠ J, VÁVRA J 2007: Protozoologie. In: VOLF P, HORAK P (Eds.), Paraziti a jejich biologie, Triton, Praha, pp. 50-137.